SNP Profiles of LCT EEN 163/D View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	TT	CC	GG	GT	AA	AC	TT	AA	GG	AG	TT	AA
1._RUQ_180	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
2._LCT_EEN_163_/D	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
3._RUQ_180	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	CC	AC	CC	AA	AA	GG	AA	CC	CC	TT	AG	CC
1._RUQ_180	AA	_	_	_	_	AA	_	GG	_	CC	CC	_	_	_
2._LCT_EEN_163_/D	_	_	_	_	_	AA	_	GG	_	CC	_	_	_	_
3._RUQ_180	AA	_	_	_	_	AA	_	GG	_	CC	GG	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	CC	CC	TT	AA	CC	TT	CC	TT	CC	CC	GG	GG	AA
1._RUQ_180	_	_	CC	TT	AA	_	_	CC	_	_	CC	-	_	AA
2._LCT_EEN_163_/D	AA	_	_	TT	_	_	_	_	_	CC	CC	_	_	AA
3._RUQ_180	_	_	_	AA	AA	_	_	CC	_	GG	GG	GG	_	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	TT	AA	CC	GG	TT	CC	GG	AA	CC	GG	GG	TT	GG
1._RUQ_180	CC	_	_	_	_	_	_	_	_	_	GG	_	_	_
2._LCT_EEN_163_/D	_	_	_	_	GG	_	-	_	_	_	GG	_	_	_
3._RUQ_180	_	_	_	_	GG	_	_	_	_	_	_	_	_	_

	57	58	59	60
_Input profile	AA	CC	TT	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_180	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._LCT_EEN_163_/D	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_180	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_163_/D RUQ_180

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._LCT_EEN_163_/D RUQ_180

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._LCT_EEN_163_/D

identical
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 104 T1

Dapeng Zhang, 2014

3._LCT_EEN_163_/D RUQ_180

68.8 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1237	53	TcSNP1253	54	TcSNP1275	55	TcSNP1293
56	TcSNP1401	57	TcSNP1404	58	TcSNP1458	59	TcSNP1524	60	TcSNP1527